IL_4JYA_022
3D structure
- PDB id
- 4JYA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structures of pseudouridinilated stop codons with ASLs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4JYA|1|A|A|516, 4JYA|1|A|U|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4JYA_022 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.159
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4JYA|1|A|G|499
4JYA|1|A|U|500
4JYA|1|A|G|501
4JYA|1|A|C|502
4JYA|1|A|C|503
4JYA|1|A|A|504
4JYA|1|A|G|505
*
4JYA|1|A|C|512
4JYA|1|A|G|513
4JYA|1|A|G|514
4JYA|1|A|U|515
4JYA|1|A|A|516
4JYA|1|A|A|517
4JYA|1|A|U|518
4JYA|1|A|A|519
4JYA|1|A|C|520
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain X
- mRNA
- Chain Y
- ASL-tRNA
Coloring options: