IL_4JYA_051

3D structure

PDB id

4JYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4JYA|1|A|U|1239, 4JYA|1|A|A|1262, 4JYA|1|A|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4JYA_051 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.2437

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4JYA|1|A|G|1237
4JYA|1|A|A|1238
4JYA|1|A|U|1239
4JYA|1|A|G|1240
*
4JYA|1|A|C|1259
4JYA|1|A|U|1260
4JYA|1|A|A|1261
4JYA|1|A|A|1262
4JYA|1|A|U|1263
4JYA|1|A|C|1264

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14