IL_4KHP_051

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4KHP|1|A|U|1239, 4KHP|1|A|A|1262, 4KHP|1|A|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KHP_051 not in the Motif Atlas

Homologous match to IL_6CZR_161

Geometric discrepancy: 0.1948

The information below is about IL_6CZR_161

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.1

Basepair signature

cWW-cSS-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4KHP|1|A|G|1237
4KHP|1|A|A|1238
4KHP|1|A|U|1239
4KHP|1|A|G|1240
*
4KHP|1|A|C|1259
4KHP|1|A|U|1260
4KHP|1|A|A|1261
4KHP|1|A|A|1262
4KHP|1|A|U|1263
4KHP|1|A|C|1264

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain C

30S Ribosomal protein S3

Chain J

30S Ribosomal protein S10

Chain N

30S Ribosomal protein S14