IL_4KZX_016

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

4KZX|1|i|U|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3264

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4KZX|1|i|C|213
4KZX|1|i|A|214
4KZX|1|i|U|215
4KZX|1|i|U|216
*
4KZX|1|i|A|293
4KZX|1|i|C|294
4KZX|1|i|C|295
4KZX|1|i|U|296
4KZX|1|i|C|297
4KZX|1|i|G|298
4KZX|1|i|G|299
4KZX|1|i|G|300

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4X

Chain I

40S ribosomal protein S8