3D structure

PDB id
4KZX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 40S ribosomal subunit in complex with eIF1.
Experimental method
X-RAY DIFFRACTION
Resolution
7.81 Å

Loop

Sequence
CCACUC*GGAG
Length
10 nucleotides
Bulged bases
4KZX|1|i|G|497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4KZX_028 not in the Motif Atlas
Homologous match to IL_4V88_408
Geometric discrepancy: 0.1377
The information below is about IL_4V88_408
Detailed Annotation
C-loop with extra cWW pair
Broad Annotation
C-loop
Motif group
IL_11347.2
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

4KZX|1|i|C|481
4KZX|1|i|C|482
4KZX|1|i|A|483
4KZX|1|i|C|484
4KZX|1|i|U|485
4KZX|1|i|C|486
*
4KZX|1|i|G|496
4KZX|1|i|G|497
4KZX|1|i|A|498
4KZX|1|i|G|499

Current chains

Chain i
18S ribosomal RNA

Nearby chains

Chain E
40S ribosomal protein S4X
Chain Y
40S ribosomal protein S24

Coloring options:


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