IL_4KZX_034

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GUCGCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

4KZX|1|i|A|618, 4KZX|1|i|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_034 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1492

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4KZX|1|i|G|601
4KZX|1|i|U|602
4KZX|1|i|C|603
4KZX|1|i|G|604
4KZX|1|i|C|605
4KZX|1|i|A|606
4KZX|1|i|G|607
*
4KZX|1|i|C|614
4KZX|1|i|G|615
4KZX|1|i|G|616
4KZX|1|i|U|617
4KZX|1|i|A|618
4KZX|1|i|A|619
4KZX|1|i|U|620
4KZX|1|i|U|621
4KZX|1|i|C|622

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30