IL_4KZX_050

3D structure

PDB id

4KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1.

Experimental method

X-RAY DIFFRACTION

Resolution

7.81 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZX_050 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2116

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4KZX|1|i|G|924
4KZX|1|i|G|925
4KZX|1|i|C|926
4KZX|1|i|C|927
*
4KZX|1|i|G|1006
4KZX|1|i|A|1007
4KZX|1|i|A|1008
4KZX|1|i|U|1009

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S3a

Chain N

40S ribosomal protein S13

Chain b

40S ribosomal protein S27