IL_4KZY_016

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

4KZY|1|i|U|296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZY_016 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3265

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4KZY|1|i|C|213
4KZY|1|i|A|214
4KZY|1|i|U|215
4KZY|1|i|U|216
*
4KZY|1|i|A|293
4KZY|1|i|C|294
4KZY|1|i|C|295
4KZY|1|i|U|296
4KZY|1|i|C|297
4KZY|1|i|G|298
4KZY|1|i|G|299
4KZY|1|i|G|300

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain I

40S Ribosomal Protein S8