IL_4KZY_055

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZY_055 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1095

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4KZY|1|i|G|938
4KZY|1|i|U|939
4KZY|1|i|A|940
4KZY|1|i|U|941
*
4KZY|1|i|A|977
4KZY|1|i|G|978
4KZY|1|i|A|979
4KZY|1|i|C|980

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain B

40S Ribosomal Protein S3A

Chain O

40S Ribosomal Protein S14

Chain a

40S Ribosomal Protein S26