IL_4KZY_113

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GGAGG*CCCGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZY_113 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3876

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4KZY|1|i|G|682
4KZY|1|i|G|683
4KZY|1|i|A|684
4KZY|1|i|G|685
4KZY|1|i|G|686
*
4KZY|1|i|C|730
4KZY|1|i|C|731
4KZY|1|i|C|732
4KZY|1|i|G|733
4KZY|1|i|C|734

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain J

40S Ribosomal Protein S9

Chain W

40S Ribosomal Protein S15A