IL_4KZZ_010

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

4KZZ|1|i|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_010 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2709

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4KZZ|1|i|U|112
4KZZ|1|i|G|113
4KZZ|1|i|G|114
4KZZ|1|i|U|115
*
4KZZ|1|i|A|338
4KZZ|1|i|A|339

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain I

40S Ribosomal Protein S8

Chain L

40S Ribosomal Protein S11