IL_4KZZ_057

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_057 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.2602

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4KZZ|1|i|C|1043
4KZZ|1|i|G|1044
4KZZ|1|i|A|1045
4KZZ|1|i|A|1046
4KZZ|1|i|G|1047
*
4KZZ|1|i|C|1063
4KZZ|1|i|G|1064
4KZZ|1|i|U|1065
4KZZ|1|i|A|1066
4KZZ|1|i|G|1067

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain O

40S Ribosomal Protein S14

Chain a

40S Ribosomal Protein S26