IL_4KZZ_066
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 4KZZ|1|i|C|1211, 4KZZ|1|i|C|1212
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4KZZ_066 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3878
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4KZZ|1|i|C|1209
4KZZ|1|i|A|1210
4KZZ|1|i|C|1211
4KZZ|1|i|C|1212
4KZZ|1|i|A|1213
*
4KZZ|1|i|U|1676
4KZZ|1|i|C|1677
4KZZ|1|i|C|1678
4KZZ|1|i|C|1679
4KZZ|1|i|U|1680
4KZZ|1|i|G|1681
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain F
- 40S Ribosomal Protein S5
- Chain Q
- 40S Ribosomal Protein S16
- Chain a
- 40S Ribosomal Protein S26
- Chain c
- 40S Ribosomal Protein S28
- Chain k
- mRNA
Coloring options: