IL_4KZZ_099

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

UUUA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_099 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.2679

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4KZZ|1|i|U|1723
4KZZ|1|i|U|1724
4KZZ|1|i|U|1725
4KZZ|1|i|A|1726
*
4KZZ|1|i|U|1797
4KZZ|1|i|U|1798
4KZZ|1|i|G|1799
4KZZ|1|i|A|1800

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain I

40S Ribosomal Protein S8