IL_4KZZ_132

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4KZZ_132 not in the Motif Atlas

Homologous match to IL_8P9A_417

Geometric discrepancy: 0.2681

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

4KZZ|1|i|A|918
4KZZ|1|i|G|919
*
4KZZ|1|i|C|1015
4KZZ|1|i|A|1016
4KZZ|1|i|U|1017
4KZZ|1|i|U|1018

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain N

40S Ribosomal Protein S13

Chain W

40S Ribosomal Protein S15A

Chain b

40S Ribosomal Protein S27