IL_4LEL_280

3D structure

PDB id

4LEL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4LEL|1|YA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LEL_280 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3542

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4LEL|1|YA|G|1319
4LEL|1|YA|C|1320
4LEL|1|YA|A|1321
4LEL|1|YA|A|1322
4LEL|1|YA|U|1323
4LEL|1|YA|G|1324
*
4LEL|1|YA|C|1330
4LEL|1|YA|A|1331
4LEL|1|YA|G|1332
4LEL|1|YA|C|1333

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YW

50S ribosomal protein L22

Chain YX

50S ribosomal protein L23