3D structure

PDB id
4LF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4LF7|1|A|U|1257, 4LF7|1|A|U|1278
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LF7_051 not in the Motif Atlas
Homologous match to IL_6CZR_161
Geometric discrepancy: 0.2605
The information below is about IL_6CZR_161
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.1
Basepair signature
cWW-cSS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

4LF7|1|A|G|1255
4LF7|1|A|A|1256
4LF7|1|A|U|1257
4LF7|1|A|G|1258
*
4LF7|1|A|C|1277
4LF7|1|A|U|1278
4LF7|1|A|A|1279
4LF7|1|A|A|1280
4LF7|1|A|U|1281
4LF7|1|A|C|1282

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
ribosomal protein S3
Chain I
ribosomal protein S9
Chain J
ribosomal protein S10
Chain N
ribosomal protein S14

Coloring options:


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