3D structure

PDB id
4LF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LF7_054 not in the Motif Atlas
Homologous match to IL_4LFB_055
Geometric discrepancy: 0.0522
The information below is about IL_4LFB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

4LF7|1|A|C|1303
4LF7|1|A|G|1304
4LF7|1|A|G|1305
4LF7|1|A|A|1306
4LF7|1|A|U|1307
4LF7|1|A|U|1308
*
4LF7|1|A|A|1329
4LF7|1|A|U|1330
4LF7|1|A|G|1331
4LF7|1|A|A|1332
4LF7|1|A|A|1333
4LF7|1|A|G|1334

Current chains

Chain A
16S rRNA

Nearby chains

Chain M
ribosomal protein S13
Chain S
ribosomal protein S19
Chain U
ribosomal protein THX

Coloring options:


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