IL_4LFZ_101

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4LFZ|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_101 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1993

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.1

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

23

Unit IDs

4LFZ|1|RA|C|1208
4LFZ|1|RA|G|1209
4LFZ|1|RA|A|1210
4LFZ|1|RA|U|1211
4LFZ|1|RA|G|1212
4LFZ|1|RA|A|1213
4LFZ|1|RA|A|1214
4LFZ|1|RA|G|1215
*
4LFZ|1|RA|U|1234
4LFZ|1|RA|G|1235
4LFZ|1|RA|G|1236
4LFZ|1|RA|A|1237
4LFZ|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20