IL_4LFZ_104

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CGCAAU*AGCG

Length

10 nucleotides

Bulged bases

4LFZ|1|RA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_104 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.2614

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4LFZ|1|RA|C|1318
4LFZ|1|RA|G|1319
4LFZ|1|RA|C|1320
4LFZ|1|RA|A|1321
4LFZ|1|RA|A|1322
4LFZ|1|RA|U|1323
*
4LFZ|1|RA|A|1331
4LFZ|1|RA|G|1332
4LFZ|1|RA|C|1333
4LFZ|1|RA|G|1334

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23