IL_4LFZ_197

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4LFZ|1|XA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4LFZ_197 not in the Motif Atlas

Homologous match to IL_6CZR_141

Geometric discrepancy: 0.1134

The information below is about IL_6CZR_141

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4LFZ|1|XA|G|662
4LFZ|1|XA|A|663
4LFZ|1|XA|G|664
4LFZ|1|XA|A|665
4LFZ|1|XA|G|666
*
4LFZ|1|XA|U|740
4LFZ|1|XA|G|741
4LFZ|1|XA|G|742
4LFZ|1|XA|U|743

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XF

30S ribosomal protein S6

Chain XO

30S ribosomal protein S15

Chain XR

30S ribosomal protein S18