3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4LSK|1|XA|U|244, 4LSK|1|XA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4LSK_182 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.085
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

4LSK|1|XA|C|242
4LSK|1|XA|A|243
4LSK|1|XA|U|244
4LSK|1|XA|C|245
4LSK|1|XA|A|246
4LSK|1|XA|G|247
*
4LSK|1|XA|C|277
4LSK|1|XA|G|278
4LSK|1|XA|A|279
4LSK|1|XA|C|280
4LSK|1|XA|G|281
4LSK|1|XA|A|282
4LSK|1|XA|C|283
4LSK|1|XA|G|284

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XQ
30S ribosomal protein S17

Coloring options:


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