IL_4M6D_021

3D structure

PDB id

4M6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the aptamer minF-lysozyme complex.

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4M6D_021 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.2773

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4M6D|1|L|C|24
4M6D|1|L|A|25
4M6D|1|L|G|26
*
4M6D|1|L|C|41
4M6D|1|L|U|42
4M6D|1|L|G|43

Current chains

Chain L

aptamer

Nearby chains

Chain A

Lysozyme C

Chain C

Lysozyme C