IL_4NXM_030

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

4NXM|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NXM_030 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.072

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4NXM|1|A|G|662
4NXM|1|A|A|663
4NXM|1|A|G|664
4NXM|1|A|A|665
4NXM|1|A|G|666
*
4NXM|1|A|U|740
4NXM|1|A|G|741
4NXM|1|A|G|742
4NXM|1|A|U|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

ribosomal protein S6

Chain O

ribosomal protein S15

Chain R

ribosomal protein S18