3D structure

PDB id
4NXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8), bound with streptomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4NXN_036 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0617
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4NXN|1|A|G|887
4NXN|1|A|G|888
4NXN|1|A|A|889
4NXN|1|A|G|890
4NXN|1|A|U|891
4NXN|1|A|A|892
4NXN|1|A|C|893
4NXN|1|A|G|894
*
4NXN|1|A|U|905
4NXN|1|A|G|906
4NXN|1|A|A|907
4NXN|1|A|A|908
4NXN|1|A|A|909
4NXN|1|A|C|910

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
ribosomal protein S12

Coloring options:


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