IL_4NYA_006

3D structure

PDB id

4NYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli thiM riboswitch in complex with 5-(azidomethyl)-2-methylpyrimidin-4-amine

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

UG*CUGAGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4NYA_006 not in the Motif Atlas

Homologous match to IL_7TZS_002

Geometric discrepancy: 0.1782

The information below is about IL_7TZS_002

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_38394.1

Basepair signature

cWW-tWH-cWW-L-L-R-L

Number of instances in this motif group

2

Unit IDs

4NYA|1|B|U|20
4NYA|1|B|G|21
*
4NYA|1|B|C|38
4NYA|1|B|U|39
4NYA|1|B|G|40
4NYA|1|B|A|41
4NYA|1|B|G|42
4NYA|1|B|A|43
4NYA|1|B|A|44
4NYA|1|B|A|45

Current chains

Chain B

thiM TPP riboswitch

Nearby chains