IL_4OO8_004

3D structure

PDB id

4OO8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Streptococcus pyogenes Cas9 in complex with guide RNA and target DNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4OO8_004 not in the Motif Atlas

Geometric match to IL_4V84_071

Geometric discrepancy: 0.1851

The information below is about IL_4V84_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4OO8|1|E|C|30
4OO8|1|E|U|31
4OO8|1|E|A|32
*
4OO8|1|E|U|37
4OO8|1|E|A|38
4OO8|1|E|G|39

Current chains

Chain E

RNA (97-MER)

Nearby chains

Chain D

CRISPR-associated endonuclease Cas9/Csn1