4OO8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4OO8_001 | 1/B/32:37 | GNRA | geometric HL_6N2V_001 HL_37824.7 | |
| HL_4OO8_002 | 1/B/55:58 | Mini UNCG | geometric HL_2F8K_001 HL_48778.2 | |
| HL_4OO8_003 | 1/B/72:77 | GNRA | geometric HL_7RQB_058 NA | |
| HL_4OO8_004 | 1/B/87:91 | D-loop related | geometric HL_5F9R_004 HL_38901.2 | |
| HL_4OO8_005 | 1/E/32:37 | GNRA | geometric HL_5J7L_004 HL_37824.7 | |
| HL_4OO8_006 | 1/E/55:58 | Mini UNCG | geometric HL_5VW1_002 HL_48778.2 | |
| HL_4OO8_007 | 1/E/72:77 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_4OO8_008 | 1/E/87:91 | D-loop related | geometric HL_5F9R_004 HL_38901.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4OO8_009 | GNRA with near cWW | ||
| HL_4OO8_010 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4OO8_001 | 1/B/26:29, 1/B/40:45 | No text annotation | geometric IL_5B2T_001 IL_82683.2 | |
| IL_4OO8_002 | 1/B/54:55, 1/B/58:60 | Single bulged U | geometric IL_5FQ5_002 IL_89505.4 | |
| IL_4OO8_003 | 1/E/26:29, 1/E/40:45 | No text annotation | geometric IL_5B2T_001 IL_82683.2 | |
| IL_4OO8_005 | 1/E/54:55, 1/E/58:60 | Single bulged U | geometric IL_5B2T_002 IL_89505.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4OO8_006 | No text annotation | ||
| IL_4OO8_007 | No text annotation | ||
| IL_4OO8_008 | No text annotation | ||
| IL_4OO8_009 | No text annotation | ||
| IL_4OO8_004 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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