IL_4P3U_010

3D structure

PDB id

4P3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial A1408U-mutant ribosomal decoding site (C2 form 1)

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*G(5BU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P3U_010 not in the Motif Atlas

Geometric match to IL_4WF9_045

Geometric discrepancy: 0.2241

The information below is about IL_4WF9_045

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4P3U|1|C|G|13
4P3U|1|C|A|14
4P3U|1|C|C|15
*
4P3U|1|D|G|33
4P3U|1|D|5BU|34
4P3U|1|D|C|35

Current chains

Chain C

5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Chain D

5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'

Nearby chains

Chain A

5'-R(*UP*UP*GP*CP*GP*UP*CP*UP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'