IL_4P6F_220

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4P6F_220 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.3176

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4P6F|1|XA|C|1128
4P6F|1|XA|C|1129
4P6F|1|XA|A|1130
4P6F|1|XA|G|1131
4P6F|1|XA|C|1132
*
4P6F|1|XA|G|1142
4P6F|1|XA|G|1143

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XI

30S ribosomal protein S9