IL_4P9R_002

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AGAC*GGGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

116

Unit IDs

4P9R|1|A|A|15
4P9R|1|A|G|16
4P9R|1|A|A|17
4P9R|1|A|C|18
*
4P9R|1|A|G|223
4P9R|1|A|G|224
4P9R|1|A|G|225
4P9R|1|A|U|226

Current chains

Chain A

RNA (189-MER)

Nearby chains