IL_4P9R_004

3D structure

PDB id

4P9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Speciation of a group I intron into a lariat capping ribozyme (Heavy atom derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCACGGCCCUG*UGUGUCCAAUGAAC

Length

25 nucleotides

Bulged bases

4P9R|1|A|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4P9R|1|A|G|333
4P9R|1|A|C|334
4P9R|1|A|A|335
4P9R|1|A|C|336
4P9R|1|A|G|337
4P9R|1|A|G|338
4P9R|1|A|C|339
4P9R|1|A|C|340
4P9R|1|A|C|341
4P9R|1|A|U|342
4P9R|1|A|G|343
*
4P9R|1|A|U|545
4P9R|1|A|G|546
4P9R|1|A|U|547
4P9R|1|A|G|548
4P9R|1|A|U|549
4P9R|1|A|C|550
4P9R|1|A|C|551
4P9R|1|A|A|552
4P9R|1|A|A|553
4P9R|1|A|U|554
4P9R|1|A|G|555
4P9R|1|A|A|556
4P9R|1|A|A|557||A
4P9R|1|A|C|558||A

Current chains

Chain A

RNA (189-MER)

Nearby chains