IL_4QJH_003

3D structure

PDB id

4QJH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Twister Ribozyme with the Nucleotide 5'- to the Cleavage Site Ordered at 4.1 A Resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.88 Å

Loop

Sequence

UUGC*GCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUGC,GCAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4QJH_003 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.296

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4QJH|1|A|U|22
4QJH|1|A|U|23
4QJH|1|A|G|24
4QJH|1|A|C|25
*
4QJH|1|B|G|28
4QJH|1|B|C|29
4QJH|1|B|A|30
4QJH|1|B|A|31

Current chains

Chain A

Twister Ribozyme

Chain B

Twister Ribozyme

Nearby chains