IL_4R0D_015

3D structure

PDB id

4R0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a eukaryotic group II intron lariat

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

AGGAAG*CAGACUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22310.1

Basepair signature

cWW-L-R-tSH-tHS-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4R0D|1|A|A|429
4R0D|1|A|G|430
4R0D|1|A|G|431
4R0D|1|A|A|432
4R0D|1|A|A|433
4R0D|1|A|G|434
*
4R0D|1|A|C|491
4R0D|1|A|A|492
4R0D|1|A|G|493
4R0D|1|A|A|494
4R0D|1|A|C|495
4R0D|1|A|U|496
4R0D|1|A|U|497

Current chains

Chain A

GROUP IIB INTRON LARIAT

Nearby chains