Motif IL_22310.1 Version IL_22310.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-10 | 5-10 | 6-9 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4XEJ_387 | 4XEJ | 0.8848 | 0 | BIRE | CrPV IRES | C | 6153 | U | 6154 | C | 6155 | A | 6156 | A | 6157 | A | 6158 | C | 6159 | * | G | 6170 | U | 6171 | U | 6172 | G | 6173 | U | 6174 | G | 6175 | cWW | ncWw | ncWW | ncWW | ncWW | ncWW | |
| 2 | IL_4R0D_015 | 4R0D | 0.0000 | 0 | A | Group II catalytic intron | C | 491 | A | 492 | G | 493 | A | 494 | C | 495 | U | 496 | U | 497 | * | A | 429 | G | 430 | G | 431 | A | 432 | A | 433 | G | 434 | ncWW | ntHS | cWW | ||||
| 3 | IL_1Y0Q_001 | 1Y0Q | 0.8202 | 0 | A | Group I catalytic intron | G | 53 | G | 54 | A | 55 | A | 56 | C | 57 | A | 58 | C | 59 | * | G | 80 | C | 81 | A | 82 | A | 83 | U | 84 | C | 85 | cWW | ncWS | tSH | tHS | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAAAC*GUUGUG | 1 |
| CAGACUU*AGGAAG | 1 |
| GGAACAC*GCAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAAA*UUGU | 1 |
| AGACU*GGAA | 1 |
| GAACA*CAAU | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-tSH-tHS-L-R-L-cWW
- Heat map statistics
- Min 0.82 | Avg 0.58 | Max 0.92
Coloring options: