Motif IL_22310.1 Version IL_22310.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12		13	1-13	2-12	3-11	4-10	5-10	6-9	7-8
1	IL_4XEJ_387	4XEJ	0.8848	BIRE	CrPV IRES	C	6153	U	6154	C	6155	A	6156	A	6157	A	6158	C	6159	*	G	6170	U	6171	U	6172	G	6173	U	6174	G	6175	cWW	ncWw	ncWW		ncWW	ncWW	ncWW
2	IL_4R0D_015	4R0D	0.0000	A	Group II catalytic intron	C	491	A	492	G	493	A	494	C	495	U	496	U	497	*	A	429	G	430	G	431	A	432	A	433	G	434	ncWW					ntHS	cWW
3	IL_1Y0Q_001	1Y0Q	0.8202	A	Group I catalytic intron	G	53	G	54	A	55	A	56	C	57	A	58	C	59	*	G	80	C	81	A	82	A	83	U	84	C	85	cWW	ncWS	tSH	tHS			ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCAAAC*GUUGUG	1
CAGACUU*AGGAAG	1
GGAACAC*GCAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCAAA*UUGU	1
AGACU*GGAA	1
GAACA*CAAU	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-L-R-tSH-tHS-L-R-L-cWW
Heat map statistics: Min 0.82 | Avg 0.58 | Max 0.92

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Coloring options: Nucleotide numbers

Motif IL_22310.1 Version IL_22310.1 of this group appears in releases 3.2 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_22310.1 Version IL_22310.1 of this group appears in releases 3.2 to 3.11

Download

Csv

Json