IL_4R4P_001

3D structure

PDB id

4R4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the VS ribozyme-A756G mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

GUG*UUAC

Length

7 nucleotides

Bulged bases

4R4P|1|A|U|778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4R4P_001 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2517

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

4R4P|1|A|G|606
4R4P|1|A|U|607
4R4P|1|A|G|608
*
4R4P|1|A|U|777
4R4P|1|A|U|778
4R4P|1|A|A|779
4R4P|1|A|C|780

Current chains

Chain A

VS ribozyme RNA

Nearby chains