IL_4TS2_001
3D structure
- PDB id
- 4TS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.88 Å
Loop
- Sequence
- CGA*UG*G
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4TS2_001 not in the Motif Atlas
- Geometric match to IL_5LYS_006
- Geometric discrepancy: 0.1385
- The information below is about IL_5LYS_006
- Detailed Annotation
- Stack outside cWW
- Broad Annotation
- Stack outside cWW
- Motif group
- IL_78536.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
4TS2|1|X|C|9
4TS2|1|X|G|10
4TS2|1|X|A|12
*
4TS2|1|Y|U|86
4TS2|1|Y|G|87
*
4TS2|1|Y|G|87
Current chains
- Chain X
- Spinach aptamer RNA, bimolecular construct
- Chain Y
- Spinach aptamer RNA, bimolecular construct
Nearby chains
No other chains within 10ÅColoring options: