IL_4TS2_007

3D structure

PDB id

4TS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.88 Å

Loop

Sequence

CC*GUG*G

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TS2_007 not in the Motif Atlas

Geometric match to IL_4KZD_006

Geometric discrepancy: 0.113

The information below is about IL_4KZD_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

4TS2|1|X|C|33
4TS2|1|X|C|34
*
4TS2|1|Y|G|60
4TS2|1|Y|U|61
4TS2|1|Y|G|63
*
4TS2|1|Y|G|63

Current chains

Chain X

Spinach aptamer RNA, bimolecular construct

Chain Y

Spinach aptamer RNA, bimolecular construct

Nearby chains