IL_4TUB_011

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4TUB|1|QA|U|244, 4TUB|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0773

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4TUB|1|QA|C|242
4TUB|1|QA|A|243
4TUB|1|QA|U|244
4TUB|1|QA|C|245
4TUB|1|QA|A|246
4TUB|1|QA|G|247
*
4TUB|1|QA|C|277
4TUB|1|QA|G|278
4TUB|1|QA|A|279
4TUB|1|QA|C|280
4TUB|1|QA|G|281
4TUB|1|QA|A|282
4TUB|1|QA|C|283
4TUB|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17