3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_034 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0752
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4TUB|1|QA|G|887
4TUB|1|QA|G|888
4TUB|1|QA|A|889
4TUB|1|QA|G|890
4TUB|1|QA|U|891
4TUB|1|QA|A|892
4TUB|1|QA|C|893
4TUB|1|QA|G|894
*
4TUB|1|QA|U|905
4TUB|1|QA|G|906
4TUB|1|QA|A|907
4TUB|1|QA|A|908
4TUB|1|QA|A|909
4TUB|1|QA|C|910

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QQ
30S ribosomal protein S17

Coloring options:


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