3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
4TUB|1|RA|U|1256
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_102 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.1382
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

4TUB|1|RA|C|1253
4TUB|1|RA|G|1254
4TUB|1|RA|A|1255
4TUB|1|RA|U|1256
4TUB|1|RA|G|1257
4TUB|1|RA|A|1258
4TUB|1|RA|A|1259
4TUB|1|RA|G|1260
*
4TUB|1|RA|U|1280
4TUB|1|RA|G|1281
4TUB|1|RA|G|1282
4TUB|1|RA|A|1283
4TUB|1|RA|G|1284

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20

Coloring options:


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