3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CCUCU*AUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4TUB_158 not in the Motif Atlas
Homologous match to IL_7RQB_104
Geometric discrepancy: 0.0818
The information below is about IL_7RQB_104
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

4TUB|1|RA|C|2692
4TUB|1|RA|C|2693
4TUB|1|RA|U|2694
4TUB|1|RA|C|2695
4TUB|1|RA|U|2696
*
4TUB|1|RA|A|2738
4TUB|1|RA|U|2739
4TUB|1|RA|G|2740

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RO
50S ribosomal protein L14
Chain RR
50S ribosomal protein L17
Chain RT
50S ribosomal protein L19

Coloring options:


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