IL_4TUB_215

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_215 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.288

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4TUB|1|XA|C|1128
4TUB|1|XA|C|1129
4TUB|1|XA|A|1130
4TUB|1|XA|G|1131
4TUB|1|XA|C|1132
*
4TUB|1|XA|G|1142
4TUB|1|XA|G|1143

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9