IL_4TUB_324

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_324 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1898

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4TUB|1|YA|C|2466
4TUB|1|YA|C|2467
4TUB|1|YA|G|2468
4TUB|1|YA|A|2469
4TUB|1|YA|G|2470
*
4TUB|1|YA|C|2480
4TUB|1|YA|G|2481
4TUB|1|YA|G|2482
4TUB|1|YA|C|2483
4TUB|1|YA|G|2484

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25