IL_4TUB_355

3D structure

PDB id

4TUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUB_355 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3222

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4TUB|1|XA|C|656
4TUB|1|XA|G|657
4TUB|1|XA|G|658
*
4TUB|1|XA|C|747
4TUB|1|XA|C|748
4TUB|1|XA|C|749
4TUB|1|XA|G|750

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XO

30S ribosomal protein S15