IL_4TUC_107

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4TUC|1|RA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4TUC_107 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3835

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4TUC|1|RA|G|1319
4TUC|1|RA|C|1320
4TUC|1|RA|A|1321
4TUC|1|RA|A|1322
4TUC|1|RA|U|1323
4TUC|1|RA|G|1324
*
4TUC|1|RA|C|1330
4TUC|1|RA|A|1331
4TUC|1|RA|G|1332
4TUC|1|RA|C|1333

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22

Chain RX

50S ribosomal protein L23