IL_4U1U_214

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

4U1U|1|CA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1U_214 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1034

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

4U1U|1|CA|U|684
4U1U|1|CA|G|685
4U1U|1|CA|U|686
4U1U|1|CA|A|687
4U1U|1|CA|G|688
*
4U1U|1|CA|C|699
4U1U|1|CA|G|700
4U1U|1|CA|U|701
4U1U|1|CA|A|702
4U1U|1|CA|G|703
4U1U|1|CA|A|704
4U1U|1|CA|G|705
4U1U|1|CA|A|706

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA