IL_4U1V_025

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4U1V|1|AA|A|532, 4U1V|1|AA|U|534, 4U1V|1|AA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_025 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1418

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4U1V|1|AA|G|515
4U1V|1|AA|U|516
4U1V|1|AA|G|517
4U1V|1|AA|C|518
4U1V|1|AA|C|519
4U1V|1|AA|A|520
4U1V|1|AA|G|521
*
4U1V|1|AA|C|528
4U1V|1|AA|G|529
4U1V|1|AA|G|530
4U1V|1|AA|U|531
4U1V|1|AA|A|532
4U1V|1|AA|A|533
4U1V|1|AA|U|534
4U1V|1|AA|A|535
4U1V|1|AA|C|536

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12