3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUAAGUG*CUAAA
Length
12 nucleotides
Bulged bases
4U1V|1|BA|A|1143
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4U1V_099 not in the Motif Atlas
Geometric match to IL_5J7L_280
Geometric discrepancy: 0.1327
The information below is about IL_5J7L_280
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

4U1V|1|BA|U|1018
4U1V|1|BA|U|1019
4U1V|1|BA|A|1020
4U1V|1|BA|A|1021
4U1V|1|BA|G|1022
4U1V|1|BA|U|1023
4U1V|1|BA|G|1024
*
4U1V|1|BA|C|1140
4U1V|1|BA|U|1141
4U1V|1|BA|A|1142
4U1V|1|BA|A|1143
4U1V|1|BA|A|1144

Current chains

Chain BA
23S rRNA

Nearby chains

Chain B4
50S ribosomal protein L36
Chain BJ
50S ribosomal protein L13

Coloring options:


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