IL_4U1V_162

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4U1V|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4U1V_162 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0556

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4U1V|1|BA|C|2636
4U1V|1|BA|U|2637
4U1V|1|BA|G|2638
4U1V|1|BA|A|2639
4U1V|1|BA|G|2640
*
4U1V|1|BA|C|2774
4U1V|1|BA|G|2775
4U1V|1|BA|A|2776
4U1V|1|BA|G|2777
4U1V|1|BA|A|2778
4U1V|1|BA|U|2779
4U1V|1|BA|G|2780
4U1V|1|BA|A|2781
4U1V|1|BA|G|2782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13